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How Efficient is your 3D Organoid Imaging and Analysis Workflow?

Learn how to image and analyze even challenging 3D samples with a streamlined workflow combining routine microscopy, high speed imaging and AI analysis

Dapi – Nucleus, GFP – Plasma Membrane, Thickness 100µm, 63x objektive, 469 Z planes, 2 channels, THUNDER Imager 3D Cell Culture. Courtesy M.Sc. Dana Krauß, Medical University of Vienna (Austria). Two_color_organoid_cluster.jpg

Organoid models have transformed life science research but optimizing image analysis protocols remains a key challenge. This webinar explores a streamlined workflow for organoid research, starting with real-time 3D cell culture checks. This is followed by high-speed, high-resolution 3D imaging to generate crisp images and cleaner data for accurate AI-based segmentation and quantification of parameters such as growth rate, cell migration and 3D cellular interactions – enabling deeper insights.

Key webinar learnings:

  • How to establish a workflow that combines real-time observations and checks of organoid cultures with detailed 3D imaging followed by accurate segmentation and analysis of the resulting image data. 
  • How to image large sample volumes, such as organoids, at high speed, with low phototoxicity and photobleaching.
  • How to get cleaner data to combine with AI machine learning based object detection, for expertly processed images created using physiological light conditions.

Discover an end-to-end workflow for meaningful insights in advanced 3D cell cultures, whether you want to study organoids, spheroids, or stem cells.

The workflow presented starts with Mateo TL, which allows observation checks of organoid cell cultures easily and intuitively. The samples are then imaged using THUNDER Imager for a clear view of details deep within intact samples – in real time and without out-of-focus blur. This technology considers all relevant optical parameters, ensuring haze-free results. THUNDER Imagers excel in studying 3D cell cultures, capturing both static and dynamic cellular states with enhanced clarity.

For the study of 3D cell cultures, the end-to-end workflow showcases THUNDER Imagers' unique capabilities in automating assays to efficiently study next-generation disease models. The system allows imaging of large sample volumes, such as organoids, at high speed and with high sensitivity – ensuring low phototoxicity and photobleaching – for higher throughput under optimal conditions. Automation minimizes user interaction, even for complex experiments.

The crisp THUNDERed images, free of blur and haze, allow clear marking of signal and background. This is then the perfect starting point for AI-based object detection, segmentation, and analysis with Aivia AI image analysis software. With quantification of parameters such as growth rates, cell migration paths and velocity, and cellular interactions within the 3D environment, you can get deeper insights into your 3D cultures. 

The simple workflow path from Mateo TL to THUNDER Imager and Aivia data analysis not only streamlines the process of organoid imaging and analysis but also enhances the efficiency of research endeavors. By minimizing manual intervention and leveraging THUNDER technology, you can focus on interpreting your data and formulating hypotheses, unlocking the full potential of this solution to advance the understanding of complex biological systems.

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